pymaid: a Python-CATMAID interface¶
pymaid (short for “Python-CATMAID”) is a Python library for fetching,
analyzing and visualizing data generated with
pymaid is built on top of navis
and is fully compatible with its functions.
For a brief introduction to the library, you can read the tutorial. Visit the installation page page to see how to download the package. You can browse the example gallery and API reference to learn what you can do with pymaid.
Pymaid is licensed under the GNU GPL v3+ license. The source code is hosted at Github. Feedback, feature requests and bug reports are very welcome and best placed in issues. If you have any questions, please don’t hesitate: email@example.com
fetch data directly from CATMAID server
write data (e.g. annotations, tags, neurons) to the server
fully compatible with navis
high-level functions to analyze e.g. connectivity