pymaid.tiles.crop_neuron

pymaid.tiles.crop_neuron(x, output, dimensions=(1000, 1000), interpolate_z_res=40, remote_instance=None)[source]

Crop and save EM tiles following a neuron’s segments.

Parameters:

  • x (pymaid.CatmaidNeuron) – Neuron to cut out.

  • output (str) – File or folder.

  • dimensions (tuple of int, optional) – Dimensions of square to cut out in nanometers.

  • interpolate_z_res (int | None, optional) – If not None, will interpolate in Z direction to given resolution. Use this to interpolate virtual nodes.

  • remote_instance (pymaid.CatmaidInstance, optional) –