pymaid
2.4.0
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Tutorial
Examples
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Index
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A
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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P
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R
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S
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U
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__init__() (pymaid.CatmaidInstance method)
(pymaid.CatmaidNeuron method)
(pymaid.CatmaidNeuronList method)
(pymaid.ClustResults method)
(pymaid.CrossProjectLandmarkMatcher method)
(pymaid.LandmarkMatcher method)
(pymaid.neuron_label.Annotations method)
(pymaid.neuron_label.NeuronLabeller method)
(pymaid.neuron_label.NeuronName method)
(pymaid.neuron_label.SkeletonId method)
(pymaid.neuron_label.ThinNeuron method)
(pymaid.stack.Stack method)
(pymaid.tiles.TileLoader method)
A
add_annotations() (in module pymaid)
add_connector() (in module pymaid)
add_meta_annotations() (in module pymaid)
add_node() (in module pymaid)
add_tags() (in module pymaid)
adjacency_from_connectors() (in module pymaid)
adjacency_matrix() (in module pymaid)
Annotations (class in pymaid.neuron_label)
annotations (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
api_token (pymaid.CatmaidInstance attribute)
arbor_confidence() (in module pymaid)
C
cable_length (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
caching (pymaid.CatmaidInstance attribute)
CatmaidInstance (class in pymaid)
CatmaidNeuron (class in pymaid)
CatmaidNeuronList (class in pymaid)
clear_cache() (in module pymaid)
(pymaid.CatmaidInstance method)
cluster_by_connectivity() (in module pymaid)
cluster_by_synapse_placement() (in module pymaid)
ClustResults (class in pymaid)
cn_table_from_connectors() (in module pymaid)
color (pymaid.CatmaidNeuron attribute)
connect_catmaid() (in module pymaid)
connection_density() (in module pymaid)
connector_tags (pymaid.CatmaidNeuron attribute)
connectors (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
copy() (pymaid.CatmaidInstance method)
(pymaid.CatmaidNeuron method)
crop_neuron() (in module pymaid.tiles)
CrossProjectLandmarkMatcher (class in pymaid)
D
date_retrieved (pymaid.CatmaidNeuron attribute)
delete_neuron() (in module pymaid)
delete_nodes() (in module pymaid)
delete_tags() (in module pymaid)
differential_upload() (in module pymaid)
dist_mat (pymaid.ClustResults attribute)
downsample() (pymaid.CatmaidNeuron method)
E
eval_skids() (in module pymaid)
F
fetch() (pymaid.CatmaidInstance method)
filter_connectivity() (in module pymaid)
find_neurons() (in module pymaid)
find_nodes() (in module pymaid)
from_selection() (pymaid.CatmaidNeuronList class method)
G
gap_junctions (pymaid.CatmaidNeuron attribute)
get_annotated() (in module pymaid)
get_annotation_details() (in module pymaid)
get_annotation_id() (in module pymaid)
get_annotations() (in module pymaid)
get_arbor() (in module pymaid)
get_cable_lengths() (in module pymaid)
get_connectivity_counts() (in module pymaid)
get_connector_details() (in module pymaid)
get_connector_links() (in module pymaid)
get_connectors() (in module pymaid)
get_connectors_between() (in module pymaid)
get_connectors_in_bbox() (in module pymaid)
get_contributor_statistics() (in module pymaid)
get_edges() (in module pymaid)
get_entity_graph() (in module pymaid)
get_history() (in module pymaid)
get_import_info() (in module pymaid)
get_label_list() (in module pymaid)
get_landmark_groups() (in module pymaid)
get_landmarks() (in module pymaid)
get_logs() (in module pymaid)
get_mirror_info() (in module pymaid)
get_names() (in module pymaid)
get_neuron() (in module pymaid)
get_neuron_id() (in module pymaid)
get_neurons_in_volume() (in module pymaid)
get_node_details() (in module pymaid)
get_node_info() (in module pymaid)
get_node_location() (in module pymaid)
get_node_table() (in module pymaid)
get_node_tags() (in module pymaid)
get_nodes_in_volume() (in module pymaid)
get_nth_partners() (in module pymaid)
get_origin() (in module pymaid)
get_partners() (in module pymaid)
get_partners_in_volume() (in module pymaid)
get_paths() (in module pymaid)
get_review() (in module pymaid)
get_review_details() (in module pymaid)
get_sampler() (in module pymaid)
get_sampler_counts() (in module pymaid)
get_sampler_domains() (in module pymaid)
get_skeleton_change() (in module pymaid)
get_skeleton_ids() (in module pymaid)
get_skid_from_node() (in module pymaid)
get_skids_by_annotation() (in module pymaid)
get_skids_by_name() (in module pymaid)
get_skids_by_origin() (in module pymaid)
get_stack_info() (in module pymaid)
get_stacks() (in module pymaid)
get_team_contributions() (in module pymaid)
get_time_invested() (in module pymaid)
get_transactions() (in module pymaid)
get_user_actions() (in module pymaid)
get_user_annotations() (in module pymaid)
get_user_contributions() (in module pymaid)
get_user_list() (in module pymaid)
get_user_stats() (in module pymaid)
get_volume() (in module pymaid)
graph (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
group_matrix() (in module pymaid)
H
has_annotation() (pymaid.CatmaidNeuronList method)
has_soma() (in module pymaid)
head() (pymaid.CatmaidNeuronList method)
http_password (pymaid.CatmaidInstance attribute)
http_user (pymaid.CatmaidInstance attribute)
I
igraph (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
itertuples() (pymaid.CatmaidNeuronList method)
J
join_nodes() (in module pymaid)
join_skeletons() (in module pymaid)
L
LandmarkMatcher (class in pymaid)
leafs (pymaid.ClustResults attribute)
link_connector() (in module pymaid)
linkage (pymaid.ClustResults attribute)
load_cache() (pymaid.CatmaidInstance method)
M
make_url() (pymaid.CatmaidInstance method)
max_threads (pymaid.CatmaidInstance attribute)
mean() (pymaid.CatmaidNeuronList method)
move_nodes() (in module pymaid)
N
n_branch_nodes (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
n_connectors (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
n_cores (pymaid.CatmaidNeuronList attribute)
n_end_nodes (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
n_open_ends (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
n_postsynapses (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
n_presynapses (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
name (pymaid.CatmaidNeuronList attribute)
neuron_name (pymaid.CatmaidNeuron attribute)
NeuronLabeller (class in pymaid.neuron_label)
NeuronName (class in pymaid.neuron_label)
nodes (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
P
partners (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
plot2d() (pymaid.CatmaidNeuron method)
plot3d() (pymaid.CatmaidNeuron method)
postsynapses (pymaid.CatmaidNeuron attribute)
predict_connectivity() (in module pymaid)
presynapses (pymaid.CatmaidNeuron attribute)
project_id (pymaid.CatmaidInstance attribute)
prune_by_length() (in module pymaid)
prune_by_longest_neurite() (pymaid.CatmaidNeuron method)
prune_by_strahler() (pymaid.CatmaidNeuron method)
prune_by_volume() (pymaid.CatmaidNeuron method)
prune_distal_to() (pymaid.CatmaidNeuron method)
prune_proximal_to() (pymaid.CatmaidNeuron method)
prune_twigs() (pymaid.CatmaidNeuron method)
push_new_root() (in module pymaid)
R
reload() (pymaid.CatmaidNeuron method)
remove_annotations() (in module pymaid)
remove_duplicates() (pymaid.CatmaidNeuronList method)
remove_meta_annotations() (in module pymaid)
remove_tagged_branches() (in module pymaid)
rename_neurons() (in module pymaid)
replace_skeleton() (in module pymaid)
reroot() (pymaid.CatmaidNeuron method)
resample() (pymaid.CatmaidNeuron method)
review_status (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
root (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
S
sample() (pymaid.CatmaidNeuronList method)
save_cache() (pymaid.CatmaidInstance method)
segments (pymaid.CatmaidNeuron attribute)
server (pymaid.CatmaidInstance attribute)
set_global (pymaid.CatmaidInstance attribute)
set_loggers() (in module pymaid)
set_nodes_reviewed() (in module pymaid)
set_pbars() (in module pymaid)
setup_cache() (pymaid.CatmaidInstance method)
shared_partners() (in module pymaid)
shorten_name() (in module pymaid)
sim_mat (pymaid.ClustResults attribute)
skeleton_id (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
SkeletonId (class in pymaid.neuron_label)
small_segments (pymaid.CatmaidNeuron attribute)
soma (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
sort_values() (pymaid.CatmaidNeuronList method)
sparseness() (in module pymaid)
Stack (class in pymaid.stack)
sum() (pymaid.CatmaidNeuronList method)
summary() (pymaid.CatmaidNeuron method)
(pymaid.CatmaidNeuronList method)
T
tags (pymaid.CatmaidNeuron attribute)
(pymaid.CatmaidNeuronList attribute)
tail() (pymaid.CatmaidNeuronList method)
ThinNeuron (class in pymaid.neuron_label)
TileLoader (class in pymaid.tiles)
time_machine() (in module pymaid)
to_selection() (pymaid.CatmaidNeuronList method)
transfer_neuron() (in module pymaid)
U
union_neurons() (in module pymaid)
update_node_confidence() (in module pymaid)
update_radii() (in module pymaid)
upload_neuron() (in module pymaid)
upload_volume() (in module pymaid)
url_to_coordinates() (in module pymaid)
use_threading (pymaid.CatmaidNeuronList attribute)